Convert.Guru

MOL2 Converter

Convert MOL2 files online for free


Drop or upload your .MOL2 file

How to convert your MOL2 file

  1. Click Select File above, and choose your MOL2 file.
  2. You'll see a preview.
  3. Click the "Convert file to..." button to save your file in the format you want.


Convert MOL2 to another file type

The converter easily converts your MOL2 file to various formats—free and online. No Excel or extra software needed.

  • MOL2 to PDB
  • MOL2 to STR
  • MOL2 to CSV
  • MOL2 to JSON
  • MOL2 to XML
  • MOL2 to YAML
  • MOL2 to YML
  • MOL2 to TOML
  • MOL2 to INI
  • MOL2 to CFG
  • MOL2 to CONF
  • MOL2 to DAT

Convert a file to MOL2

The converter also works in reverse, allowing you to convert your file into the MOL2 file type—in the best quality.

  • DBF to MOL2
  • XML to MOL2
  • SQLITE to MOL2
  • XLSX to MOL2
  • SQL to MOL2
  • TSV to MOL2
  • ACCDB to MOL2
  • YAML to MOL2
  • MDB to MOL2
  • CSV to MOL2
  • ODS to MOL2
  • JSON to MOL2

About MOL2 files

MOL2 files are a type of chemical file format used to store molecular information. They are used in a variety of applications, including drug design, molecular modeling, and biochemistry. MOL2 files are supported by many software packages, such as Schrodinger, Accelrys, and various tools. MOL2 files can be converted to other file formats, such as PDB, SDF, and MOL, using software such as Open Babel and RDKit.

When converting MOL2 files, there are some important considerations. For example, some software packages may not support all the features of MOL2 files, such as atom types, partial charges, and atom mapping. Additionally, some software may not be able to handle large molecules, and the conversion process may be slow.

Due to the potential challenges of converting MOL2 files, it is often easier to use an online website such as Convert.Guru to convert them. Convert.Guru is free and easy to use, and can quickly convert MOL2 files to other formats such as PDB, SDF, and MOL.


The MOL2 Converter Story

The history of Convert.Guru began more than 25 years ago in California, when Tom Simondi published the most comprehensive database of file formats on his website. Before that, Tom had worked on Space Shuttle development at the Air Force Systems Command’s Space Division in Los Angeles. He is known as one of the top programmers of the late 1980s.

When Microsoft integrated Tom’s Filext database into Windows XP, it became the leading platform for analyzing and processing file types and formats.

Today, we use the latest technologies to analyze, process, and convert one of the world's largest collections of file formats. We are committed to developing the best MOL2 converter by continuously improving quality, usability, and reliability.

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