Extract text from GENBANK files
To convert your GENBANK file to another format, you need NCBI_Genome_Workbench or other Data software.
To convert other file formats to the "Bioinformatics Sequence File" file type, you need software like NCBI_Genome_Workbench or a similar tool.
A .GENBANK file is a text-based bioinformatics format used to store nucleotide or protein sequences alongside extensive biological annotations. Developed by the National Center for Biotechnology Information (NCBI), it serves as the standard record format for the GenBank database, detailing everything from organism source and taxonomy to specific gene features like coding regions (CDS) and translation products.
While .GENBANK files are human-readable, their rigid indentation and verbose structure make them cumbersome for direct manipulation or use in many downstream analysis pipelines. Users frequently experience issues when trying to input these files into alignment tools like Clustal Omega or sequence editors that prioritize the simpler FASTA format. The files can also become unwieldy in size when housing whole genomes, making manual parsing difficult without specialized libraries like Biopython or expensive software suites like SnapGene or Geneious.
To bridge this gap, converting .GENBANK is often necessary. For sequence alignment and general processing, converting to FASTA is the standard workflow. For transferring annotations to genome browsers, converting to GFF3 (General Feature Format) is ideal. If you need to analyze the feature table (genes, exons, notes) in a spreadsheet, converting to CSV or XLSX allows for easy sorting and filtering.
Convert.Guru analyzes your GENBANK file, detects the exact format, and lets you read the text inside.
Users also converted GB, GBK, SOR, FASTA, GFF, GFF3 and BED files.
If you want to convert GENBANK file to FASTA, GFF, GFF3, BED, CSV, JSON, XML, YAML, YML, TOML, INI or CFG, you can use NCBI_Genome_Workbench or similar software from the "Genetic Sequence Storage" category. In the File menu, look for Save As… or Export….
To convert DBF, XML, SQLITE, XLSX, SQL, TSV, ACCDB, YAML, MDB, CSV, ODS or JSON files to GENBANK, try NCBI_Genome_Workbench or another comparable tool in the "Genetic Sequence Storage" category.
The history of Convert.Guru began over 25 years ago in California with Tom Simondi’s file-format database. A former contributor to Space Shuttle development and a software pioneer of the 1980s, Simondi established a trusted resource for file type analysis that was even referenced by Microsoft Windows XP. Today, we use modern technology to process and convert thousands of file formats while continually improving our GENBANK converter.